Skip to content
GitLab

PostgreSQL replication and failover for Linux package installations (PREMIUM SELF)

If you're a Free user of GitLab self-managed, consider using a cloud-hosted solution. This document doesn't cover self-compiled installations.

If a setup with replication and failover isn't what you were looking for, see the database configuration document for the Linux packages.

It's recommended to read this document fully before attempting to configure PostgreSQL with replication and failover for GitLab.

Architecture

The Linux pacakage-recommended configuration for a PostgreSQL cluster with replication failover requires:

  • A minimum of three PostgreSQL nodes.
  • A minimum of three Consul server nodes.
  • A minimum of three PgBouncer nodes that track and handle primary database reads and writes.
    • An internal load balancer (TCP) to balance requests between the PgBouncer nodes.
  • Database Load Balancing enabled.
    • A local PgBouncer service configured on each PostgreSQL node. This is separate from the main PgBouncer cluster that tracks the primary.
@startuml
card "**Internal Load Balancer**" as ilb #9370DB
skinparam linetype ortho

together {
  collections "**GitLab Rails** x3" as gitlab #32CD32
  collections "**Sidekiq** x4" as sidekiq #ff8dd1
}

collections "**Consul** x3" as consul #e76a9b

card "Database" as database {
  collections "**PGBouncer x3**\n//Consul//" as pgbouncer #4EA7FF

  card "**PostgreSQL** //Primary//\n//Patroni//\n//PgBouncer//\n//Consul//" as postgres_primary #4EA7FF
  collections "**PostgreSQL** //Secondary// **x2**\n//Patroni//\n//PgBouncer//\n//Consul//" as postgres_secondary #4EA7FF

  pgbouncer -[#4EA7FF]-> postgres_primary
  postgres_primary .[#4EA7FF]r-> postgres_secondary
}

gitlab -[#32CD32]-> ilb
gitlab -[hidden]-> pgbouncer
gitlab .[#32CD32,norank]-> postgres_primary
gitlab .[#32CD32,norank]-> postgres_secondary

sidekiq -[#ff8dd1]-> ilb
sidekiq -[hidden]-> pgbouncer
sidekiq .[#ff8dd1,norank]-> postgres_primary
sidekiq .[#ff8dd1,norank]-> postgres_secondary

ilb -[#9370DB]-> pgbouncer

consul -[#e76a9b]r-> pgbouncer
consul .[#e76a9b,norank]r-> postgres_primary
consul .[#e76a9b,norank]r-> postgres_secondary
@enduml

You also need to take into consideration the underlying network topology, making sure you have redundant connectivity between all Database and GitLab instances to avoid the network becoming a single point of failure.

NOTE: As of GitLab 13.3, PostgreSQL 12 is shipped with Linux package installations. Clustering for PostgreSQL 12 is supported only with Patroni. See the Patroni section for further details. Starting with GitLab 14.0, only PostgreSQL 12 is shipped with Linux package installations, and thus Patroni becomes mandatory for replication and failover.

Database node

Each database node runs four services:

  • PostgreSQL: The database itself.
  • Patroni: Communicates with other Patroni services in the cluster and handles failover when issues with the leader server occurs. The failover procedure consists of:
    • Selecting a new leader for the cluster.
    • Promoting the new node to leader.
    • Instructing remaining servers to follow the new leader node.
  • PgBouncer: A local pooler for the node. Used for read queries as part of Database Load Balancing.
  • Consul agent: To communicate with Consul cluster which stores the current Patroni state. The agent monitors the status of each node in the database cluster and tracks its health in a service definition on the Consul cluster.

Consul server node

The Consul server node runs the Consul server service. These nodes must have reached the quorum and elected a leader before Patroni cluster bootstrap; otherwise, database nodes wait until such Consul leader is elected.

PgBouncer node

Each PgBouncer node runs two services:

  • PgBouncer: The database connection pooler itself.
  • Consul agent: Watches the status of the PostgreSQL service definition on the Consul cluster. If that status changes, Consul runs a script which updates the PgBouncer configuration to point to the new PostgreSQL leader node and reloads the PgBouncer service.

Connection flow

Each service in the package comes with a set of default ports. You may need to make specific firewall rules for the connections listed below:

There are several connection flows in this setup:

Primary

  • Application servers connect to either PgBouncer directly via its default port or via a configured Internal Load Balancer (TCP) that serves multiple PgBouncers.
  • PgBouncer connects to the primary database server's PostgreSQL default port.

Database Load Balancing

For read queries against data that haven't been recently changed and are up to date on all database nodes:

  • Application servers connect to the local PgBouncer service via its default port on each database node in a round-robin approach.
  • Local PgBouncer connects to the local database server's PostgreSQL default port.

Replication

  • Patroni actively manages the running PostgreSQL processes and configuration.
  • PostgreSQL secondaries connect to the primary database servers PostgreSQL default port
  • Consul servers and agents connect to each others Consul default ports

Setting it up

Required information

Before proceeding with configuration, you need to collect all the necessary information.

Network information

PostgreSQL doesn't listen on any network interface by default. It needs to know which IP address to listen on to be accessible to other services. Similarly, PostgreSQL access is controlled based on the network source.

This is why you need:

  • The IP address of each node's network interface. This can be set to 0.0.0.0 to listen on all interfaces. It cannot be set to the loopback address 127.0.0.1.
  • Network Address. This can be in subnet (that is, 192.168.0.0/255.255.255.0) or Classless Inter-Domain Routing (CIDR) (192.168.0.0/24) form.

Consul information

When using default setup, minimum configuration requires:

  • CONSUL_USERNAME. The default user for Linux package installations is gitlab-consul

  • CONSUL_DATABASE_PASSWORD. Password for the database user.

  • CONSUL_PASSWORD_HASH. This is a hash generated out of Consul username/password pair. It can be generated with:

    sudo gitlab-ctl pg-password-md5 CONSUL_USERNAME

  • CONSUL_SERVER_NODES. The IP addresses or DNS records of the Consul server nodes.

Few notes on the service itself:

  • The service runs under a system account, by default gitlab-consul.
  • If you are using a different username, you have to specify it through the CONSUL_USERNAME variable.
  • Passwords are stored in the following locations:
    • /etc/gitlab/gitlab.rb: hashed
    • /var/opt/gitlab/pgbouncer/pg_auth: hashed
    • /var/opt/gitlab/consul/.pgpass: plaintext

PostgreSQL information

When configuring PostgreSQL, we do the following:

  • Set max_replication_slots to double the number of database nodes. Patroni uses one extra slot per node when initiating the replication.
  • Set max_wal_senders to one more than the allocated number of replication slots in the cluster. This prevents replication from using up all of the available database connections.

In this document we are assuming 3 database nodes, which makes this configuration:

patroni['postgresql']['max_replication_slots'] = 6
patroni['postgresql']['max_wal_senders'] = 7

As previously mentioned, prepare the network subnets that need permission to authenticate with the database. You also need to have the IP addresses or DNS records of Consul server nodes on hand.

You need the following password information for the application's database user:

  • POSTGRESQL_USERNAME. The default user for Linux package installations is gitlab

  • POSTGRESQL_USER_PASSWORD. The password for the database user

  • POSTGRESQL_PASSWORD_HASH. This is a hash generated out of the username/password pair. It can be generated with:

    sudo gitlab-ctl pg-password-md5 POSTGRESQL_USERNAME

Patroni information

You need the following password information for the Patroni API:

  • PATRONI_API_USERNAME. A username for basic auth to the API
  • PATRONI_API_PASSWORD. A password for basic auth to the API

PgBouncer information

When using a default setup, the minimum configuration requires:

  • PGBOUNCER_USERNAME. The default user for Linux package installations is pgbouncer

  • PGBOUNCER_PASSWORD. This is a password for PgBouncer service.

  • PGBOUNCER_PASSWORD_HASH. This is a hash generated out of PgBouncer username/password pair. It can be generated with:

    sudo gitlab-ctl pg-password-md5 PGBOUNCER_USERNAME

  • PGBOUNCER_NODE, is the IP address or a FQDN of the node running PgBouncer.

Few things to remember about the service itself:

  • The service runs as the same system account as the database. In the package, this is by default gitlab-psql
  • If you use a non-default user account for PgBouncer service (by default pgbouncer), you need to specify this username.
  • Passwords are stored in the following locations:
    • /etc/gitlab/gitlab.rb: hashed, and in plain text
    • /var/opt/gitlab/pgbouncer/pg_auth: hashed

Installing the Linux package

First, make sure to download and install the Linux package on each node.

Make sure you install the necessary dependencies from step 1, add GitLab package repository from step 2. When installing the GitLab package, do not supply EXTERNAL_URL value.

Configuring the Database nodes

  1. Make sure to configure the Consul nodes.
  2. Make sure you collect CONSUL_SERVER_NODES, PGBOUNCER_PASSWORD_HASH, POSTGRESQL_PASSWORD_HASH, the number of db nodes, and the network address before executing the next step.

Configuring Patroni cluster

You must enable Patroni explicitly to be able to use it (with patroni['enable'] = true).

Any PostgreSQL configuration item that controls replication, for example wal_level, max_wal_senders, or others are strictly controlled by Patroni. These configurations override the original settings that you make with the postgresql[...] configuration key. Hence, they are all separated and placed under patroni['postgresql'][...]. This behavior is limited to replication. Patroni honours any other PostgreSQL configuration that was made with the postgresql[...] configuration key. For example, max_wal_senders by default is set to 5. If you wish to change this you must set it with the patroni['postgresql']['max_wal_senders'] configuration key.

NOTE: The configuration of a Patroni node is very similar to a repmgr but shorter. When Patroni is enabled, first you can ignore any replication setting of PostgreSQL (which is overwritten). Then, you can remove any repmgr[...] or repmgr-specific configuration as well. Especially, make sure that you remove postgresql['shared_preload_libraries'] = 'repmgr_funcs'.

Here is an example:

# Disable all components except Patroni, PgBouncer and Consul
roles(['patroni_role', 'pgbouncer_role'])

# PostgreSQL configuration
postgresql['listen_address'] = '0.0.0.0'

# Disable automatic database migrations
gitlab_rails['auto_migrate'] = false

# Configure the Consul agent
consul['services'] = %w(postgresql)

# START user configuration
# Please set the real values as explained in Required Information section
#
# Replace PGBOUNCER_PASSWORD_HASH with a generated md5 value
postgresql['pgbouncer_user_password'] = 'PGBOUNCER_PASSWORD_HASH'
# Replace POSTGRESQL_REPLICATION_PASSWORD_HASH with a generated md5 value
postgresql['sql_replication_password'] = 'POSTGRESQL_REPLICATION_PASSWORD_HASH'
# Replace POSTGRESQL_PASSWORD_HASH with a generated md5 value
postgresql['sql_user_password'] = 'POSTGRESQL_PASSWORD_HASH'

# Replace PATRONI_API_USERNAME with a username for Patroni Rest API calls (use the same username in all nodes)
patroni['username'] = 'PATRONI_API_USERNAME'
# Replace PATRONI_API_PASSWORD with a password for Patroni Rest API calls (use the same password in all nodes)
patroni['password'] = 'PATRONI_API_PASSWORD'

# Sets `max_replication_slots` to double the number of database nodes.
# Patroni uses one extra slot per node when initiating the replication.
patroni['postgresql']['max_replication_slots'] = X

# Set `max_wal_senders` to one more than the number of replication slots in the cluster.
# This is used to prevent replication from using up all of the
# available database connections.
patroni['postgresql']['max_wal_senders'] = X+1

# Replace XXX.XXX.XXX.XXX/YY with Network Addresses for your other patroni nodes
patroni['allowlist'] = %w(XXX.XXX.XXX.XXX/YY 127.0.0.1/32)

# Replace XXX.XXX.XXX.XXX/YY with Network Address
postgresql['trust_auth_cidr_addresses'] = %w(XXX.XXX.XXX.XXX/YY 127.0.0.1/32)

# Local PgBouncer service for Database Load Balancing
pgbouncer['databases'] = {
  gitlabhq_production: {
    host: "127.0.0.1",
    user: "PGBOUNCER_USERNAME",
    password: 'PGBOUNCER_PASSWORD_HASH'
  }
}

# Replace placeholders:
#
# Y.Y.Y.Y consul1.gitlab.example.com Z.Z.Z.Z
# with the addresses gathered for CONSUL_SERVER_NODES
consul['configuration'] = {
  retry_join: %w(Y.Y.Y.Y consul1.gitlab.example.com Z.Z.Z.Z)
}
#
# END user configuration

All database nodes use the same configuration. The leader node is not determined in configuration, and there is no additional or different configuration for either leader or replica nodes.

After the configuration of a node is complete, you must reconfigure GitLab on each node for the changes to take effect.

Generally, when Consul cluster is ready, the first node that reconfigures becomes the leader. You do not need to sequence the nodes reconfiguration. You can run them in parallel or in any order. If you choose an arbitrary order, you do not have any predetermined leader.

Enable Monitoring

Introduced in GitLab 12.0.

If you enable Monitoring, it must be enabled on all database servers.

  1. Create/edit /etc/gitlab/gitlab.rb and add the following configuration:

    # Enable service discovery for Prometheus
consul['monitoring_service_discovery'] = true

# Set the network addresses that the exporters must listen on
node_exporter['listen_address'] = '0.0.0.0:9100'
postgres_exporter['listen_address'] = '0.0.0.0:9187'

  2. Run sudo gitlab-ctl reconfigure to compile the configuration.

Enable TLS support for the Patroni API

By default, the Patroni REST API is served over HTTP. You have the option to enable TLS and use HTTPS over the same port.

To enable TLS, you need PEM-formatted certificate and private key files. Both files must be readable by the PostgreSQL user (gitlab-psql by default, or the one set by postgresql['username']):

patroni['tls_certificate_file'] = '/path/to/server/certificate.pem'
patroni['tls_key_file'] = '/path/to/server/key.pem'

If the server's private key is encrypted, specify the password to decrypt it:

patroni['tls_key_password'] = 'private-key-password' # This is the plain-text password.

If you are using a self-signed certificate or an internal CA, you need to either disable the TLS verification or pass the certificate of the internal CA, otherwise you may run into an unexpected error when using the gitlab-ctl patroni .... commands. The Linux package ensures that Patroni API clients honor this configuration.

TLS certificate verification is enabled by default. To disable it:

patroni['tls_verify'] = false

Alternatively, you can pass a PEM-formatted certificate of the internal CA. Again, the file must be readable by the PostgreSQL user:

patroni['tls_ca_file'] = '/path/to/ca.pem'

When TLS is enabled, mutual authentication of the API server and client is possible for all endpoints, the extent of which depends on the patroni['tls_client_mode'] attribute:

  • none (default): The API does not check for any client certificates.
  • optional: Client certificates are required for all unsafe API calls.
  • required: Client certificates are required for all API calls.

The client certificates are verified against the CA certificate that is specified with the patroni['tls_ca_file'] attribute. Therefore, this attribute is required for mutual TLS authentication. You also need to specify PEM-formatted client certificate and private key files. Both files must be readable by the PostgreSQL user:

patroni['tls_client_mode'] = 'required'
patroni['tls_ca_file'] = '/path/to/ca.pem'

patroni['tls_client_certificate_file'] = '/path/to/client/certificate.pem'
patroni['tls_client_key_file'] = '/path/to/client/key.pem'

You can use different certificates and keys for both API server and client on different Patroni nodes as long as they can be verified. However, the CA certificate (patroni['tls_ca_file']), TLS certificate verification (patroni['tls_verify']), and client TLS authentication mode (patroni['tls_client_mode']), must each have the same value on all nodes.

Configure PgBouncer nodes

  1. Make sure you collect CONSUL_SERVER_NODES, CONSUL_PASSWORD_HASH, and PGBOUNCER_PASSWORD_HASH before executing the next step.

  2. On each node, edit the /etc/gitlab/gitlab.rb configuration file and replace values noted in the # START user configuration section as below:

    # Disable all components except PgBouncer and Consul agent
roles(['pgbouncer_role'])

# Configure PgBouncer
pgbouncer['admin_users'] = %w(pgbouncer gitlab-consul)

# Configure Consul agent
consul['watchers'] = %w(postgresql)

# START user configuration
# Please set the real values as explained in Required Information section
# Replace CONSUL_PASSWORD_HASH with with a generated md5 value
# Replace PGBOUNCER_PASSWORD_HASH with with a generated md5 value
pgbouncer['users'] = {
  'gitlab-consul': {
    password: 'CONSUL_PASSWORD_HASH'
  },
  'pgbouncer': {
    password: 'PGBOUNCER_PASSWORD_HASH'
  }
}
# Replace placeholders:
#
# Y.Y.Y.Y consul1.gitlab.example.com Z.Z.Z.Z
# with the addresses gathered for CONSUL_SERVER_NODES
consul['configuration'] = {
  retry_join: %w(Y.Y.Y.Y consul1.gitlab.example.com Z.Z.Z.Z)
}
#
# END user configuration

    NOTE: pgbouncer_role was introduced with GitLab 10.3.

  3. Run gitlab-ctl reconfigure

  4. Create a .pgpass file so Consul is able to reload PgBouncer. Enter the PGBOUNCER_PASSWORD twice when asked:

    gitlab-ctl write-pgpass --host 127.0.0.1 --database pgbouncer --user pgbouncer --hostuser gitlab-consul

  5. Enable monitoring

PgBouncer Checkpoint

  1. Ensure each node is talking to the current node leader:

    gitlab-ctl pgb-console # Supply PGBOUNCER_PASSWORD when prompted

    If there is an error psql: ERROR: Auth failed after typing in the password, ensure you have previously generated the MD5 password hashes with the correct format. The correct format is to concatenate the password and the username: PASSWORDUSERNAME. For example, Sup3rS3cr3tpgbouncer would be the text needed to generate an MD5 password hash for the pgbouncer user.

  2. After the console prompt has become available, run the following queries:

    show databases ; show clients ;

    The output should be similar to the following:

            name         |  host       | port |      database       | force_user | pool_size | reserve_pool | pool_mode | max_connections | current_connections
---------------------+-------------+------+---------------------+------------+-----------+--------------+-----------+-----------------+---------------------
 gitlabhq_production | MASTER_HOST | 5432 | gitlabhq_production |            |        20 |            0 |           |               0 |                   0
 pgbouncer           |             | 6432 | pgbouncer           | pgbouncer  |         2 |            0 | statement |               0 |                   0
(2 rows)

 type |   user    |      database       |  state  |   addr         | port  | local_addr | local_port |    connect_time     |    request_time     |    ptr    | link | remote_pid | tls
------+-----------+---------------------+---------+----------------+-------+------------+------------+---------------------+---------------------+-----------+------+------------+-----
 C    | pgbouncer | pgbouncer           | active  | 127.0.0.1      | 56846 | 127.0.0.1  |       6432 | 2017-08-21 18:09:59 | 2017-08-21 18:10:48 | 0x22b3880 |      |          0 |
(2 rows)

Configure the internal load balancer

If you're running more than one PgBouncer node as recommended, you must set up a TCP internal load balancer to serve each correctly. This can be accomplished with any reputable TCP load balancer.

As an example, here's how you could do it with HAProxy:

global
    log /dev/log local0
    log localhost local1 notice
    log stdout format raw local0

defaults
    log global
    default-server inter 10s fall 3 rise 2
    balance leastconn

frontend internal-pgbouncer-tcp-in
    bind *:6432
    mode tcp
    option tcplog

    default_backend pgbouncer

backend pgbouncer
    mode tcp
    option tcp-check

    server pgbouncer1 <ip>:6432 check
    server pgbouncer2 <ip>:6432 check
    server pgbouncer3 <ip>:6432 check

Refer to your preferred Load Balancer's documentation for further guidance.

Configuring the Application nodes

Application nodes run the gitlab-rails service. You may have other attributes set, but the following need to be set.

  1. Edit /etc/gitlab/gitlab.rb:

    # Disable PostgreSQL on the application node
postgresql['enable'] = false

gitlab_rails['db_host'] = 'PGBOUNCER_NODE' or 'INTERNAL_LOAD_BALANCER'
gitlab_rails['db_port'] = 6432
gitlab_rails['db_password'] = 'POSTGRESQL_USER_PASSWORD'
gitlab_rails['auto_migrate'] = false
gitlab_rails['db_load_balancing'] = { 'hosts' => ['POSTGRESQL_NODE_1', 'POSTGRESQL_NODE_2', 'POSTGRESQL_NODE_3'] }

  2. Reconfigure GitLab for the changes to take effect.

Application node post-configuration

Ensure that all migrations ran:

gitlab-rake gitlab:db:configure

Note: If you encounter a rake aborted! error stating that PgBouncer is failing to connect to PostgreSQL it may be that your PgBouncer node's IP address is missing from PostgreSQL's trust_auth_cidr_addresses in gitlab.rb on your database nodes. See PgBouncer error ERROR: pgbouncer cannot connect to server in the Troubleshooting section before proceeding.

Backups

Do not backup or restore GitLab through a PgBouncer connection: this causes a GitLab outage.

Read more about this and how to reconfigure backups.

Ensure GitLab is running

At this point, your GitLab instance should be up and running. Verify you're able to sign in, and create issues and merge requests. If you encounter issues, see the Troubleshooting section.

Example configuration

This section describes several fully expanded example configurations.

Example recommended setup

This example uses three Consul servers, three PgBouncer servers (with an associated internal load balancer), three PostgreSQL servers, and one application node.

We start with all servers on the same 10.6.0.0/16 private network range, they can connect to each freely other on those addresses.

Here is a list and description of each machine and the assigned IP:

  • 10.6.0.11: Consul 1
  • 10.6.0.12: Consul 2
  • 10.6.0.13: Consul 3
  • 10.6.0.20: Internal Load Balancer
  • 10.6.0.21: PgBouncer 1
  • 10.6.0.22: PgBouncer 2
  • 10.6.0.23: PgBouncer 3
  • 10.6.0.31: PostgreSQL 1
  • 10.6.0.32: PostgreSQL 2
  • 10.6.0.33: PostgreSQL 3
  • 10.6.0.41: GitLab application

All passwords are set to toomanysecrets. Do not use this password or derived hashes and the external_url for GitLab is http://gitlab.example.com.

After the initial configuration, if a failover occurs, the PostgreSQL leader node changes to one of the available secondaries until it is failed back.

Example recommended setup for Consul servers

On each server edit /etc/gitlab/gitlab.rb:

# Disable all components except Consul
roles(['consul_role'])

consul['configuration'] = {
  server: true,
  retry_join: %w(10.6.0.11 10.6.0.12 10.6.0.13)
}
consul['monitoring_service_discovery'] =  true

Reconfigure GitLab for the changes to take effect.

Example recommended setup for PgBouncer servers

On each server edit /etc/gitlab/gitlab.rb:

# Disable all components except Pgbouncer and Consul agent
roles(['pgbouncer_role'])

# Configure PgBouncer
pgbouncer['admin_users'] = %w(pgbouncer gitlab-consul)

pgbouncer['users'] = {
  'gitlab-consul': {
    password: '5e0e3263571e3704ad655076301d6ebe'
  },
  'pgbouncer': {
    password: '771a8625958a529132abe6f1a4acb19c'
  }
}

consul['watchers'] = %w(postgresql)
consul['configuration'] = {
  retry_join: %w(10.6.0.11 10.6.0.12 10.6.0.13)
}
consul['monitoring_service_discovery'] =  true

Reconfigure GitLab for the changes to take effect.

Internal load balancer setup

An internal load balancer (TCP) is then required to be setup to serve each PgBouncer node (in this example on the IP of 10.6.0.20). An example of how to do this can be found in the PgBouncer Configure Internal Load Balancer section.

Example recommended setup for PostgreSQL servers

On database nodes edit /etc/gitlab/gitlab.rb:

# Disable all components except Patroni, PgBouncer and Consul
roles(['patroni_role', 'pgbouncer_role'])

# PostgreSQL configuration
postgresql['listen_address'] = '0.0.0.0'
postgresql['hot_standby'] = 'on'
postgresql['wal_level'] = 'replica'

# Disable automatic database migrations
gitlab_rails['auto_migrate'] = false

postgresql['pgbouncer_user_password'] = '771a8625958a529132abe6f1a4acb19c'
postgresql['sql_user_password'] = '450409b85a0223a214b5fb1484f34d0f'
patroni['username'] = 'PATRONI_API_USERNAME'
patroni['password'] = 'PATRONI_API_PASSWORD'
patroni['postgresql']['max_replication_slots'] = 6
patroni['postgresql']['max_wal_senders'] = 7

patroni['allowlist'] = = %w(10.6.0.0/16 127.0.0.1/32)
postgresql['trust_auth_cidr_addresses'] = %w(10.6.0.0/16 127.0.0.1/32)

# Local PgBouncer service for Database Load Balancing
pgbouncer['databases'] = {
  gitlabhq_production: {
    host: "127.0.0.1",
    user: "pgbouncer",
    password: '771a8625958a529132abe6f1a4acb19c'
  }
}

# Configure the Consul agent
consul['services'] = %w(postgresql)
consul['configuration'] = {
  retry_join: %w(10.6.0.11 10.6.0.12 10.6.0.13)
}
consul['monitoring_service_discovery'] =  true

Reconfigure GitLab for the changes to take effect.

Example recommended setup manual steps

After deploying the configuration follow these steps:

  1. Find the primary database node:

    gitlab-ctl get-postgresql-primary

  2. On 10.6.0.41, our application server:

    Set gitlab-consul user's PgBouncer password to toomanysecrets:

    gitlab-ctl write-pgpass --host 127.0.0.1 --database pgbouncer --user pgbouncer --hostuser gitlab-consul

    Run database migrations:

    gitlab-rake gitlab:db:configure

Patroni

NOTE: Using Patroni instead of Repmgr is supported for PostgreSQL 11 and required for PostgreSQL 12. Starting with GitLab 14.0, only PostgreSQL 12 is available and hence Patroni is mandatory to achieve failover and replication.

Patroni is an opinionated solution for PostgreSQL high-availability. It takes the control of PostgreSQL, overrides its configuration, and manages its lifecycle (start, stop, restart). Patroni is the only option for PostgreSQL 12 clustering and for cascading replication for Geo deployments.

The fundamental architecture (mentioned above) does not change for Patroni. You do not need any special consideration for Patroni while provisioning your database nodes. Patroni heavily relies on Consul to store the state of the cluster and elect a leader. Any failure in Consul cluster and its leader election propagates to the Patroni cluster as well.

Patroni monitors the cluster and handles any failover. When the primary node fails, it works with Consul to notify PgBouncer. On failure, Patroni handles the transitioning of the old primary to a replica and rejoins it to the cluster automatically.

With Patroni, the connection flow is slightly different. Patroni on each node connects to Consul agent to join the cluster. Only after this point it decides if the node is the primary or a replica. Based on this decision, it configures and starts PostgreSQL which it communicates with directly over a Unix socket. This means that if the Consul cluster is not functional or does not have a leader, Patroni and by extension PostgreSQL does not start. Patroni also exposes a REST API which can be accessed via its default port on each node.

Check replication status

Run gitlab-ctl patroni members to query Patroni for a summary of the cluster status:

+ Cluster: postgresql-ha (6970678148837286213) ------+---------+---------+----+-----------+
| Member                              | Host         | Role    | State   | TL | Lag in MB |
+-------------------------------------+--------------+---------+---------+----+-----------+
| gitlab-database-1.example.com       | 172.18.0.111 | Replica | running |  5 |         0 |
| gitlab-database-2.example.com       | 172.18.0.112 | Replica | running |  5 |       100 |
| gitlab-database-3.example.com       | 172.18.0.113 | Leader  | running |  5 |           |
+-------------------------------------+--------------+---------+---------+----+-----------+

To verify the status of replication:

echo -e 'select * from pg_stat_wal_receiver\x\g\x \n select * from pg_stat_replication\x\g\x' | gitlab-psql

The same command can be run on all three database servers. It returns any information about replication available depending on the role the server is performing.

The leader should return one record per replica:

-[ RECORD 1 ]----+------------------------------
pid              | 371
usesysid         | 16384
usename          | gitlab_replicator
application_name | gitlab-database-1.example.com
client_addr      | 172.18.0.111
client_hostname  |
client_port      | 42900
backend_start    | 2021-06-14 08:01:59.580341+00
backend_xmin     |
state            | streaming
sent_lsn         | 0/EA13220
write_lsn        | 0/EA13220
flush_lsn        | 0/EA13220
replay_lsn       | 0/EA13220
write_lag        |
flush_lag        |
replay_lag       |
sync_priority    | 0
sync_state       | async
reply_time       | 2021-06-18 19:17:14.915419+00

Investigate further if:

  • There are missing or extra records.
  • reply_time is not current.

The lsn fields relate to which write-ahead-log segments have been replicated. Run the following on the leader to find out the current Log Sequence Number (LSN):

echo 'SELECT pg_current_wal_lsn();' | gitlab-psql

If a replica is not in sync, gitlab-ctl patroni members indicates the volume of missing data, and the lag fields indicate the elapsed time.

Read more about the data returned by the leader in the PostgreSQL documentation, including other values for the state field.

The replicas should return:

-[ RECORD 1 ]---------+-------------------------------------------------------------------------------------------------
pid                   | 391
status                | streaming
receive_start_lsn     | 0/D000000
receive_start_tli     | 5
received_lsn          | 0/EA13220
received_tli          | 5
last_msg_send_time    | 2021-06-18 19:16:54.807375+00
last_msg_receipt_time | 2021-06-18 19:16:54.807512+00
latest_end_lsn        | 0/EA13220
latest_end_time       | 2021-06-18 19:07:23.844879+00
slot_name             | gitlab-database-1.example.com
sender_host           | 172.18.0.113
sender_port           | 5432
conninfo              | user=gitlab_replicator host=172.18.0.113 port=5432 application_name=gitlab-database-1.example.com

Read more about the data returned by the replica in the PostgreSQL documentation.

Selecting the appropriate Patroni replication method

Review the Patroni documentation carefully before making changes as some of the options carry a risk of potential data loss if not fully understood. The replication mode configured determines the amount of tolerable data loss.

WARNING: Replication is not a backup strategy! There is no replacement for a well-considered and tested backup solution.

Linux package installations default synchronous_commit to on.

postgresql['synchronous_commit'] = 'on'
gitlab['geo-postgresql']['synchronous_commit'] = 'on'

Customizing Patroni failover behavior

Linux package installations expose several options allowing more control over the Patroni restoration process.

Each option is shown below with its default value in /etc/gitlab/gitlab.rb.

patroni['use_pg_rewind'] = true
patroni['remove_data_directory_on_rewind_failure'] = false
patroni['remove_data_directory_on_diverged_timelines'] = false

The upstream documentation is always more up to date, but the table below should provide a minimal overview of functionality.

Setting Overview
use_pg_rewind Try running pg_rewind on the former cluster leader before it rejoins the database cluster.
remove_data_directory_on_rewind_failure If pg_rewind fails, remove the local PostgreSQL data directory and re-replicate from the current cluster leader.
remove_data_directory_on_diverged_timelines If pg_rewind cannot be used and the former leader's timeline has diverged from the current one, delete the local data directory and re-replicate from the current cluster leader.

Database authorization for Patroni

Patroni uses a Unix socket to manage the PostgreSQL instance. Therefore, a connection from the local socket must be trusted.

Also, replicas use the replication user (gitlab_replicator by default) to communicate with the leader. For this user, you can choose between trust and md5 authentication. If you set postgresql['sql_replication_password'], Patroni uses md5 authentication, and otherwise falls back to trust. You must to specify the cluster CIDR in postgresql['md5_auth_cidr_addresses'] or postgresql['trust_auth_cidr_addresses'] respectively.

Interacting with Patroni cluster

You can use gitlab-ctl patroni members to check the status of the cluster members. To check the status of each node gitlab-ctl patroni provides two additional sub-commands, check-leader and check-replica which indicate if a node is the primary or a replica.

When Patroni is enabled, it exclusively controls PostgreSQL's startup, shutdown, and restart. This means, to shut down PostgreSQL on a certain node, you must shutdown Patroni on the same node with:

sudo gitlab-ctl stop patroni

Stopping or restarting the Patroni service on the leader node triggers an automatic failover. If you need Patroni to reload its configuration or restart the PostgreSQL process without triggering the failover, you must use the reload or restart sub-commands of gitlab-ctl patroni instead. These two sub-commands are wrappers of the same patronictl commands.

Manual failover procedure for Patroni

While Patroni supports automatic failover, you also have the ability to perform a manual one, where you have two slightly different options:

  • Failover: allows you to perform a manual failover when there are no healthy nodes. You can perform this action in any PostgreSQL node:

    sudo gitlab-ctl patroni failover

  • Switchover: only works when the cluster is healthy and allows you to schedule a switchover (it can happen immediately). You can perform this action in any PostgreSQL node:

    sudo gitlab-ctl patroni switchover

For further details on this subject, see the Patroni documentation.

Geo secondary site considerations

When a Geo secondary site is replicating from a primary site that uses Patroni and PgBouncer, replicating through PgBouncer is not supported. The secondary must replicate directly from the leader node in the Patroni cluster. When there is an automatic or manual failover in the Patroni cluster, you can manually re-point your secondary site to replicate from the new leader with:

sudo gitlab-ctl replicate-geo-database --host=<new_leader_ip> --replication-slot=<slot_name>

Otherwise, the replication does not happen, even if the original node gets re-added as a follower node. This re-syncs your secondary site database and may take a long time depending on the amount of data to sync. You may also need to run gitlab-ctl reconfigure if replication is still not working after re-syncing.

Recovering the Patroni cluster

To recover the old primary and rejoin it to the cluster as a replica, you can start Patroni with:

sudo gitlab-ctl start patroni

No further configuration or intervention is needed.

Maintenance procedure for Patroni

With Patroni enabled, you can run planned maintenance on your nodes. To perform maintenance on one node without Patroni, you can put it into maintenance mode with:

sudo gitlab-ctl patroni pause

When Patroni runs in a paused mode, it does not change the state of PostgreSQL. After you are done, you can resume Patroni:

sudo gitlab-ctl patroni resume

For further details, see Patroni documentation on this subject.

Switching from repmgr to Patroni

WARNING: Switching from repmgr to Patroni is straightforward, the other way around is not. Rolling back from Patroni to repmgr can be complicated and may involve deletion of data directory. If you need to do that, contact GitLab support.

You can switch an exiting database cluster to use Patroni instead of repmgr with the following steps:

  1. Stop repmgr on all replica nodes and lastly with the primary node:

    sudo gitlab-ctl stop repmgrd

  2. Stop PostgreSQL on all replica nodes:

    sudo gitlab-ctl stop postgresql

    NOTE: Ensure that there is no walsender process running on the primary node. ps aux | grep walsender must not show any running process.

  3. On the primary node, configure Patroni. Remove repmgr and any other repmgr-specific configuration. Also remove any configuration that is related to PostgreSQL replication.

  4. Reconfigure GitLab on the primary node. It makes it the leader. You can check this with:

    sudo gitlab-ctl tail patroni

  5. Repeat the last two steps for all replica nodes. gitlab.rb should look the same on all nodes.

  6. If present, remove the gitlab_repmgr database and role on the primary. If you don't delete the gitlab_repmgr database, upgrading PostgreSQL 11 to 12 fails with:

    could not load library "$libdir/repmgr_funcs": ERROR:  could not access file "$libdir/repmgr_funcs": No such file or directory

Upgrading PostgreSQL major version in a Patroni cluster

As of GitLab 14.1, PostgreSQL 12.6 and 13.3 are both shipped with the Linux package by default. As of GitLab 15.0, PostgreSQL 13 is the default. If you want to upgrade to PostgreSQL 13 in versions prior to GitLab 15.0, you must ask for it explicitly.

WARNING: The procedure for upgrading PostgreSQL in a Patroni cluster is different than when upgrading using repmgr. The following outlines the key differences and important considerations that need to be accounted for when upgrading PostgreSQL.

Here are a few key facts that you must consider before upgrading PostgreSQL:

  • The main point is that you have to shut down the Patroni cluster. This means that your GitLab deployment is down for the duration of database upgrade or, at least, as long as your leader node is upgraded. This can be a significant downtime depending on the size of your database.

  • Upgrading PostgreSQL creates a new data directory with a new control data. From the perspective of Petroni, this is a new cluster that needs to be bootstrapped again. Therefore, as part of the upgrade procedure, the cluster state (stored in Consul) is wiped out. After the upgrade is complete, Patroni bootstraps a new cluster. This changes your cluster ID.

  • The procedures for upgrading leader and replicas are not the same. That is why it is important to use the right procedure on each node.

  • Upgrading a replica node deletes the data directory and resynchronizes it from the leader using the configured replication method (pg_basebackup is the only available option). It might take some time for replica to catch up with the leader, depending on the size of your database.

  • An overview of the upgrade procedure is outlined in the Patroni documentation. You can still use gitlab-ctl pg-upgrade which implements this procedure with a few adjustments.

Considering these, you should carefully plan your PostgreSQL upgrade:

  1. Find out which node is the leader and which node is a replica:

    gitlab-ctl patroni members

    NOTE: On a Geo secondary site, the Patroni leader node is called standby leader.

  2. Stop Patroni only on replicas.

    sudo gitlab-ctl stop patroni

  3. Enable the maintenance mode on the application node:

    sudo gitlab-ctl deploy-page up

  4. Upgrade PostgreSQL on the leader node and make sure that the upgrade is completed successfully:

    sudo gitlab-ctl pg-upgrade -V 13

    NOTE: gitlab-ctl pg-upgrade tries to detect the role of the node. If for any reason the auto-detection does not work or you believe it did not detect the role correctly, you can use the --leader or --replica arguments to manually override it.

  5. Check the status of the leader and cluster. You can proceed only if you have a healthy leader:

    gitlab-ctl patroni check-leader

# OR

gitlab-ctl patroni members

  6. You can now disable the maintenance mode on the application node:

    sudo gitlab-ctl deploy-page down

  7. Upgrade PostgreSQL on replicas (you can do this in parallel on all of them):

    sudo gitlab-ctl pg-upgrade -V 13

If issues are encountered upgrading the replicas, there is a troubleshooting section that might be the solution.

NOTE: Reverting the PostgreSQL upgrade with gitlab-ctl revert-pg-upgrade has the same considerations as gitlab-ctl pg-upgrade. You should follow the same procedure by first stopping the replicas, then reverting the leader, and finally reverting the replicas.

Near zero downtime upgrade of PostgreSQL in a Patroni cluster (Experimental)

Patroni enables you to run a major PostgreSQL upgrade without shutting down the cluster. However, this requires additional resources to host the new Patroni nodes with the upgraded PostgreSQL. In practice, with this procedure, you are:

  • Creating a new Patroni cluster with a new version of PostgreSQL.
  • Migrating the data from the existing cluster.

This procedure is non-invasive, and does not impact your existing cluster before switching it off. However, it can be both time- and resource-consuming. Consider their trade-offs with availability.

The steps, in order:

  1. Provision resources for the new cluster.
  2. Preflight check.
  3. Configure the leader of the new cluster.
  4. Start publisher on the existing leader.
  5. Copy the data from the existing cluster.
  6. Replicate data from the existing cluster.
  7. Grow the new cluster.
  8. Switch the application to use the new cluster.
  9. Clean up.

Provision resources for the new cluster

You need a new set of resources for Patroni nodes. The new Patroni cluster does not require exactly the same number of nodes as the existing cluster. You may choose a different number of nodes based on your requirements. The new cluster uses the existing Consul cluster (with a different patroni['scope']) and PgBouncer nodes.

Make sure that at least the leader node of the existing cluster is accessible from the nodes of the new cluster.

Preflight check

We rely on PostgreSQL logical replication to support near-zero downtime upgrades of Patroni clusters. The of logical replication requirements must be met. In particular, wal_level must be logical. To check the wal_level, run the following command with gitlab-psql on any node of the existing cluster:

SHOW wal_level;

By default, Patroni sets wal_level to replica. You must increase it to logical. Changing wal_level requires restarting PostgreSQL, so this step leads to a short downtime (hence near-zero downtime). To do this on the Patroni leader node:

  1. Edit gitlab.rb by setting:

    patroni['postgresql']['wal_level'] = 'logical'

  2. Run gitlab-ctl reconfigure. This writes the configuration but does not restart PostgreSQL service.

  3. Run gitlab-ctl patroni restart to restart PostgreSQL and apply the new wal_level without triggering failover. For the duration of restart cycle, the cluster leader is unavailable.

  4. Verify the change by running SHOW wal_level with gitlab-psql.

Configure the leader of the new cluster

Configure the first node of the new cluster. It becomes the leader of the new cluster. You can use the configuration of the existing cluster, if it is compatible with the new PostgreSQL version. Refer to the documentation on configuring Patroni clusters.

In addition to the common configuration, you must apply the following in gitlab.rb to:

  1. Make sure that the new Patroni cluster uses a different scope. The scope is used to namespace the Patroni settings in Consul, making it possible to use the same Consul cluster for the existing and the new clusters.

    patroni['scope'] = 'postgresql_new-ha'

  2. Make sure that Consul agents don't mix PostgreSQL services offered by the existing and the new Patroni clusters. For this purpose, you must use an internal attribute:

    consul['internal']['postgresql_service_name'] = 'postgresql_new'

Start publisher on the existing leader

On the existing leader, run this SQL statement with gitlab-psql to start a logical replication publisher:

CREATE PUBLICATION patroni_upgrade FOR ALL TABLES;

Copy the data from the existing cluster

To dump the current database from the existing cluster, run these commands on the leader of the new cluster:

  1. Optional. Copy global database objects:

    pg_dumpall -h ${EXISTING_CLUSTER_LEADER} -U gitlab-psql -g | gitlab-psql

    You can ignore the errors about existing database objects, such as roles. They are created when the node is configured for the first time.

  2. Copy the current database:

    pg_dump -h ${EXISTING_CLUSTER_LEADER} -U gitlab-psql -d gitlabhq_production -s | gitlab-psql

    Depending on the size of your database, this command may take a while to complete.

The pg_dump and pg_dumpall commands are in /opt/gitlab/embedded/bin. In these commands, EXISTING_CLUSTER_LEADER is the host address of the leader node of the existing cluster.

NOTE: The gitlab-psql user must be able to authenticate the existing leader from the new leader node.

Replicate data from the existing cluster

After taking the initial data dump, you must keep the new leader in sync with the latest changes of your existing cluster. On the new leader, run this SQL statement with gitlab-psql to subscribe to publication of the existing leader:

CREATE SUBSCRIPTION patroni_upgrade
  CONNECTION 'host=EXISTING_CLUSTER_LEADER dbname=gitlabhq_production user=gitlab-psql'
  PUBLICATION patroni_upgrade;

In this statement, EXISTING_CLUSTER_LEADER is the host address of the leader node of the existing cluster. You can also use other parameters to change the connection string. For example, you can pass the authentication password.

To check the status of replication, run these queries:

  • SELECT * FROM pg_replication_slots WHERE slot_name = 'patroni_upgrade' on the existing leader (the publisher).
  • SELECT * FROM pg_stat_subscription on the new leader (the subscriber).

Grow the new cluster

Configure other nodes of the new cluster in the way you configured the leader. Make sure that you use the same patroni['scope'] and consul['internal']['postgresql_service_name'].

What happens here:

  • The application still uses the existing leader as its database backend.
  • The logical replication ensures that the new leader keeps in sync.
  • When other nodes are added to the new cluster, Patroni handles the replication to the these nodes.

It is a good idea to wait until the replica nodes of the new cluster are initialized and caught up on the replication lag.

Switch the application to use the new cluster

Up to this point, you can stop the upgrade procedure without losing data on the existing cluster. When you switch the database backend of the application and point it to the new cluster, the old cluster does not receive new updates. It falls behind the new cluster. After this point, any recovery must be done from the nodes of the new cluster.

To do the switch on all PgBouncer nodes:

  1. Edit gitlab.rb by setting:

    consul['watchers'] = %w(postgresql_new)
consul['internal']['postgresql_service_name'] = 'postgresql_new'

  2. Run gitlab-ctl reconfigure.

Clean up

After completing these steps, then you can clean up the resources of the old Patroni cluster. They are no longer needed. However, before removing the resources, remove the logical replication subscription on the new leader by running DROP SUBSCRIPTION patroni_upgrade with gitlab-psql.

Troubleshooting

Consul and PostgreSQL changes not taking effect

Due to the potential impacts, gitlab-ctl reconfigure only reloads Consul and PostgreSQL, it does not restart the services. However, not all changes can be activated by reloading.

To restart either service, run gitlab-ctl restart SERVICE

For PostgreSQL, it is usually safe to restart the leader node by default. Automatic failover defaults to a 1 minute timeout. Provided the database returns before then, nothing else needs to be done.

On the Consul server nodes, it is important to restart the Consul service in a controlled manner.

PgBouncer error ERROR: pgbouncer cannot connect to server

You may get this error when running gitlab-rake gitlab:db:configure or you may see the error in the PgBouncer log file.

PG::ConnectionBad: ERROR:  pgbouncer cannot connect to server

The problem may be that your PgBouncer node's IP address is not included in the trust_auth_cidr_addresses setting in /etc/gitlab/gitlab.rb on the database nodes.

You can confirm that this is the issue by checking the PostgreSQL log on the leader database node. If you see the following error then trust_auth_cidr_addresses is the problem.

2018-03-29_13:59:12.11776 FATAL:  no pg_hba.conf entry for host "123.123.123.123", user "pgbouncer", database "gitlabhq_production", SSL off

To fix the problem, add the IP address to /etc/gitlab/gitlab.rb.

postgresql['trust_auth_cidr_addresses'] = %w(123.123.123.123/32 <other_cidrs>)

Reconfigure GitLab for the changes to take effect.

Reinitialize a replica

If a replica cannot start or rejoin the cluster, or when it lags behind and cannot catch up, it might be necessary to reinitialize the replica:

  1. Check the replication status to confirm which server needs to be reinitialized. For example:

    + Cluster: postgresql-ha (6970678148837286213) ------+---------+--------------+----+-----------+
| Member                              | Host         | Role    | State        | TL | Lag in MB |
+-------------------------------------+--------------+---------+--------------+----+-----------+
| gitlab-database-1.example.com       | 172.18.0.111 | Replica | running      | 55 |         0 |
| gitlab-database-2.example.com       | 172.18.0.112 | Replica | start failed |    |   unknown |
| gitlab-database-3.example.com       | 172.18.0.113 | Leader  | running      | 55 |           |
+-------------------------------------+--------------+---------+--------------+----+-----------+

  2. Sign in to the broken server and reinitialize the database and replication. Patroni shuts down PostgreSQL on that server, remove the data directory, and reinitialize it from scratch:

    sudo gitlab-ctl patroni reinitialize-replica --member gitlab-database-2.example.com

    This can be run on any Patroni node, but be aware that sudo gitlab-ctl patroni reinitialize-replica without --member restarts the server it is run on. You should run it locally on the broken server to reduce the risk of unintended data loss.

  3. Monitor the logs:

    sudo gitlab-ctl tail patroni

Reset the Patroni state in Consul

WARNING: Resetting the Patroni state in Consul is a potentially destructive process. Make sure that you have a healthy database backup first.

As a last resort you can reset the Patroni state in Consul completely.

This may be required if your Patroni cluster is in an unknown or bad state and no node can start:

+ Cluster: postgresql-ha (6970678148837286213) ------+---------+---------+----+-----------+
| Member                              | Host         | Role    | State   | TL | Lag in MB |
+-------------------------------------+--------------+---------+---------+----+-----------+
| gitlab-database-1.example.com       | 172.18.0.111 | Replica | stopped |    |   unknown |
| gitlab-database-2.example.com       | 172.18.0.112 | Replica | stopped |    |   unknown |
| gitlab-database-3.example.com       | 172.18.0.113 | Replica | stopped |    |   unknown |
+-------------------------------------+--------------+---------+---------+----+-----------+

Before deleting the Patroni state in Consul, try and resolve the gitlab-ctl errors on the Patroni nodes.

This process results in a reinitialized Patroni cluster when the first Patroni node starts.

To reset the Patroni state in Consul:

  1. Take note of the Patroni node that was the leader, or that the application thinks is the current leader, if the current state shows more than one, or none:

    • Look on the PgBouncer nodes in /var/opt/gitlab/consul/databases.ini, which contains the hostname of the current leader.

    • Look in the Patroni logs /var/log/gitlab/patroni/current (or the older rotated and compressed logs /var/log/gitlab/patroni/@40000*) on all database nodes to see which server was most recently identified as the leader by the cluster:

      INFO: no action. I am a secondary (database1.local) and following a leader (database2.local)

  2. Stop Patroni on all nodes:

    sudo gitlab-ctl stop patroni

  3. Reset the state in Consul:

    /opt/gitlab/embedded/bin/consul kv delete -recurse /service/postgresql-ha/

  4. Start one Patroni node, which initializes the Patroni cluster to elect as a leader. It's highly recommended to start the previous leader (noted in the first step), so as to not lose existing writes that may have not been replicated because of the broken cluster state:

    sudo gitlab-ctl start patroni

  5. Start all other Patroni nodes that join the Patroni cluster as replicas:

    sudo gitlab-ctl start patroni

If you are still seeing issues, the next step is restoring the last healthy backup.

Errors in the Patroni log about a pg_hba.conf entry for 127.0.0.1

The following log entry in the Patroni log indicates the replication is not working and a configuration change is needed:

FATAL:  no pg_hba.conf entry for replication connection from host "127.0.0.1", user "gitlab_replicator"

To fix the problem, ensure the loopback interface is included in the CIDR addresses list:

  1. Edit /etc/gitlab/gitlab.rb:

    postgresql['trust_auth_cidr_addresses'] = %w(<other_cidrs> 127.0.0.1/32)

  2. Reconfigure GitLab for the changes to take effect.

  3. Check that all the replicas are synchronized

Errors in Patroni logs: the requested start point is ahead of the Write Ahead Log (WAL) flush position

This error indicates that the database is not replicating:

FATAL:  could not receive data from WAL stream: ERROR:  requested starting point 0/5000000 is ahead of the WAL flush position of this server 0/4000388

This example error is from a replica that was initially misconfigured, and had never replicated.

Fix it by reinitializing the replica.

Patroni fails to start with MemoryError

Patroni may fail to start, logging an error and stack trace:

MemoryError
Traceback (most recent call last):
  File "/opt/gitlab/embedded/bin/patroni", line 8, in <module>
    sys.exit(main())
[..]
  File "/opt/gitlab/embedded/lib/python3.7/ctypes/__init__.py", line 273, in _reset_cache
    CFUNCTYPE(c_int)(lambda: None)

If the stack trace ends with CFUNCTYPE(c_int)(lambda: None), this code triggers MemoryError if the Linux server has been hardened for security.

The code causes Python to write temporary executable files, and if it cannot find a file system in which to do this. For example, if noexec is set on the /tmp file system, it fails with MemoryError (read more in the issue).

Workarounds:

  • Remove noexec from the mount options for filesystems like /tmp and /var/tmp.
  • If set to enforcing, SELinux may also prevent these operations. Verify the issue is fixed by setting SELinux to permissive.

Patroni first shipped in the Linux package for GitLab 13.1, along with a build of Python 3.7. The code which causes this was removed in Python 3.8: this fix shipped in the Linux package for GitLab 14.3 and later, removing the need for a workaround.

Errors running gitlab-ctl

Patroni nodes can get into a state where gitlab-ctl commands fail and gitlab-ctl reconfigure cannot fix the node.

If this co-incides with a version upgrade of PostgreSQL, follow a different procedure

One common symptom is that gitlab-ctl cannot determine information it needs about the installation if the database server is failing to start:

Malformed configuration JSON file found at /opt/gitlab/embedded/nodes/<HOSTNAME>.json.
This usually happens when your last run of `gitlab-ctl reconfigure` didn't complete successfully.
Error while reinitializing replica on the current node: Attributes not found in
/opt/gitlab/embedded/nodes/<HOSTNAME>.json, has reconfigure been run yet?

Similarly, the nodes file (/opt/gitlab/embedded/nodes/<HOSTNAME>.json) should contain a lot of information, but might get created with only:

{
  "name": "<HOSTNAME>"
}

The following process for fixing this includes reinitializing this replica: the current state of PostgreSQL on this node is discarded:

  1. Shut down the Patroni and (if present) PostgreSQL services:

    sudo gitlab-ctl status
sudo gitlab-ctl stop patroni
sudo gitlab-ctl stop postgresql

  2. Remove /var/opt/gitlab/postgresql/data in case its state prevents PostgreSQL from starting:

    cd /var/opt/gitlab/postgresql
sudo rm -rf data

    Take care with this step to avoid data loss. This step can be also achieved by renaming data/: make sure there's enough free disk for a new copy of the primary database, and remove the extra directory when the replica is fixed.

  3. With PostgreSQL not running, the nodes file now gets created successfully:

    sudo gitlab-ctl reconfigure

  4. Start Patroni:

    sudo gitlab-ctl start patroni

  5. Monitor the logs and check the cluster state:

    sudo gitlab-ctl tail patroni
sudo gitlab-ctl patroni members

  6. Re-run reconfigure again:

    sudo gitlab-ctl reconfigure

  7. Reinitialize the replica if gitlab-ctl patroni members indicates this is needed:

    sudo gitlab-ctl patroni reinitialize-replica

If this procedure doesn't work and if the cluster is unable to elect a leader, there is a another fix which should only be used as a last resort.

PostgreSQL major version upgrade fails on a Patroni replica

A Patroni replica can get stuck in a loop during gitlab-ctl pg-upgrade, and the upgrade fails.

An example set of symptoms is as follows:

  1. A postgresql service is defined, which shouldn't usually be present on a Patroni node. It is present because gitlab-ctl pg-upgrade adds it to create a new empty database:

    run: patroni: (pid 1972) 1919s; run: log: (pid 1971) 1919s
down: postgresql: 1s, normally up, want up; run: log: (pid 1973) 1919s

  2. PostgreSQL generates PANIC log entries in /var/log/gitlab/postgresql/current as Patroni is removing /var/opt/gitlab/postgresql/data as part of reinitializing the replica:

    DETAIL:  Could not open file "pg_xact/0000": No such file or directory.
WARNING:  terminating connection because of crash of another server process
LOG:  all server processes terminated; reinitializing
PANIC:  could not open file "global/pg_control": No such file or directory

  3. In /var/log/gitlab/patroni/current, Patroni logs the following. The local PostgreSQL version is different from the cluster leader:

    INFO: trying to bootstrap from leader 'HOSTNAME'
pg_basebackup: incompatible server version 12.6
pg_basebackup: removing data directory "/var/opt/gitlab/postgresql/data"
ERROR: Error when fetching backup: pg_basebackup exited with code=1

Important: This workaround applies when the Patroni cluster is in the following state:

This workaround completes the PostgreSQL upgrade on a Patroni replica by setting the node to use the new PostgreSQL version, and then reinitializing it as a replica in the new cluster that was created when the leader was upgraded:

  1. Check the cluster status on all nodes to confirm which is the leader and what state the replicas are in

    sudo gitlab-ctl patroni members

  2. Replica: check which version of PostgreSQL is active:

    sudo ls -al /opt/gitlab/embedded/bin | grep postgres

  3. Replica: ensure the nodes file is correct and gitlab-ctl can run. This resolves the errors running gitlab-ctl issue if the replica has any of those errors as well:

    sudo gitlab-ctl stop patroni
sudo gitlab-ctl reconfigure

  4. Replica: relink the PostgreSQL binaries to the required version to fix the incompatible server version error:

    1. Edit /etc/gitlab/gitlab.rb and specify the required version:

      postgresql['version'] = 13

    2. Reconfigure GitLab:

      sudo gitlab-ctl reconfigure

    3. Check the binaries are relinked. The binaries distributed for PostgreSQL vary between major releases, it's typical to have a small number of incorrect symbolic links:

      sudo ls -al /opt/gitlab/embedded/bin | grep postgres

  5. Replica: ensure PostgreSQL is fully reinitialized for the specified version:

    cd /var/opt/gitlab/postgresql
sudo rm -rf data
sudo gitlab-ctl reconfigure

  6. Replica: optionally monitor the database in two additional terminal sessions:

    • Disk use increases as pg_basebackup runs. Track progress of the replica initialization with:

      cd /var/opt/gitlab/postgresql
watch du -sh data

    • Monitor the process in the logs:

      sudo gitlab-ctl tail patroni

  7. Replica: Start Patroni to reinitialize the replica:

    sudo gitlab-ctl start patroni

  8. Replica: After it completes, remove the hardcoded version from /etc/gitlab/gitlab.rb:

    1. Edit /etc/gitlab/gitlab.rb and remove postgresql['version'].

    2. Reconfigure GitLab:

      sudo gitlab-ctl reconfigure

    3. Check the correct binaries are linked:

      sudo ls -al /opt/gitlab/embedded/bin | grep postgres

  9. Check the cluster status on all nodes:

    sudo gitlab-ctl patroni members

Repeat this procedure on the other replica if required.

Issues with other components

If you're running into an issue with a component not outlined here, be sure to check the troubleshooting section of their specific documentation page: